[Bioperl-l] Bio::Tk::HitDisplay

[Heikki Lehvaslaiho]

Keith James wrote:
> 
> Hi all,
> 
> I've committed a Frame-based Tk widget to Bio::Tk which represents
> Blast/Fasta results as sets of coloured bars on a canvas. A demo
> script called hitdisplay.pl is in bioperl-live/examples and contains
> example code for transforming a BPlite Blast Hit into the data
> structure used by the widget to draw the picture.


Looks great, James. 

Tip to others:

	(You'll need bioperl-gui installed first)
	cd .../bioperl-live/examples
	zcat blast/out/tblastn.206.out.gz | hitdisplay.pl

	right and left click sequence names at left


  -Heikki

> There's some fairly complete pod documentation and lots of code
> comments. A few things need improving, like show/hiding annotation
> text for all hits can be very slow when there are a lot of HSPs
> displayed. I guess that there's some standard gui-programming tricks
> to sort this out.
> 
> cheers,
> 
> --
> 
> -= Keith James - kdj@sanger.ac.uk - http://www.sanger.ac.uk/Users/kdj =-
> The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SA
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
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