[Biojava-l] PDB parsing: Calculate absolute atom numbers of a chain.

[Andreas Prlic]

Hi Umanga,

You will need to use the getPDBCode() method to obtain the PDB residue
number as well as the chain ID to select the residue in Jmol.

Andreas




2009/3/4 Ashika Umanga Umagiliya <aumanga at biggjapan.com>:
> Greetings all,
>
> From a database; I retrieve PDB-id ,chainID and epitope positions.These
> epitope positions are calculated relative to its Chain.
> I want to select these epitope positions (residues) in JMol.But in jmol the
> select query support only absolute residues numbers.
>
> Ex:
> CHAIN L : residues 10,12,13,15 (relative to chain L)
> But in PDB file (in JMOL) the values are 210,212,213,215 - this are what I
> want to calculate?
>
> Anyway to calculate this?
>
> Thanks in advance,
> Umanga
>
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