[Biojava-l] PDB parsing: Calculate absolute atom numbers of a chain.

[Ashika Umanga Umagiliya]

Greetings all,

 From a database; I retrieve PDB-id ,chainID and epitope positions.These 
epitope positions are calculated relative to its Chain.
I want to select these epitope positions (residues) in JMol.But in jmol 
the select query support only absolute residues numbers.

Ex:
CHAIN L : residues 10,12,13,15 (relative to chain L)
But in PDB file (in JMOL) the values are 210,212,213,215 - this are what 
I want to calculate?

Anyway to calculate this?

Thanks in advance,
Umanga

-- 
アシカ ウマンガ ウマギリヤ
㈱国際バイオインフォマティクス研究所（BiGG)
〒140-0001
東京都品川区北品川3-6-9 アンドウビル8F
TEL:03-6679-8763
FAX:03-6679-8764