[Biojava-l] Saving back chromatogram?

Richard Holland holland at eaglegenomics.com
Thu Feb 19 08:23:31 UTC 2009


No, BioJava does not include the ability to write ABI files. Technically
you could write your own code to do it though because the file format is
fully understood by the parser and is formally described by a paper
linked to from the Javadoc for ABIFChromatogram. By combining the
information from the paper with the code from the parser, it should be
possible to create a writer.

Richard

Ashika Umanga Umagiliya wrote:
> Greetings all,
> 
> I was able to display chromatogram using ABIFChromatogram class .
> Now what I want to implement is a chromatogram Editor,where user can
> edit base calls and save aback to AB1 files.
> Is there a way to do this in BioJava?
> 
> Best Regards,
> umanga
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-- 
Richard Holland, BSc MBCS
Finance Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/



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