[Biojava-l] parsePDB

[Andreas Prlic]

can you send me one of your files off list?

the parser could parse all of PDB about one year ago ...

And.		


On 5 Dec 2005, at 14:13, Tamas Horvath wrote:

> I have some very plane pdb files (Coordinates only), and if I try to  
> parsethem, it throws:
> java.lang.StringIndexOutOfBoundsException: String index out of range:  
> 6    at java.lang.String.substring(String.java:1765)    at  
> org.biojava.bio.structure.io.PDBFileParser.parsePDBFile(PDBFileParser.j 
> ava:764)    at  
> org.biojava.bio.structure.io.PDBFileParser.parsePDBFile(PDBFileParser.j 
> ava:720)
>
> What do I need in the pdb file to be able to parse it?
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Andreas Prlic      Wellcome Trust Sanger Institute
                               Hinxton, Cambridge CB10 1SA, UK
			 +44 (0) 1223 49 6891