[Biojava-l] How to combine multiple Sequence objects into asingleSequence object?

[Francois Pepin]

Yeah, but you'd still need to copy the annotations and features over as well.

Maybe some method to append 2 sequences (maybe to split it in 2 as well) along with all their luggage would be a good idea. SequenceTools would probably be the best place for that.

François

-----Original Message-----
From: biojava-l-bounces at portal.open-bio.org [mailto:biojava-l-bounces at portal.open-bio.org] On Behalf Of Schreiber, Mark
Sent: 18 octobre, 2003 00:15
To: kiviet at science.uva.nl; biojava-l at biojava.org
Subject: RE: [Biojava-l] How to combine multiple Sequence objects into asingleSequence object?


Hi -
 
We get asked this a lot. Unfortunately there isn't an easy solution. If you have access to all of the files referenced in the main EMBL file then you could write a simple program to retrieve and open them all and then use something like Edit functions to join them together.
 
- Mark
 

	-----Original Message----- 
	From: Daniel Kiviet [mailto:kiviet at science.uva.nl] 
	Sent: Sat 18/10/2003 4:21 a.m. 
	To: biojava-l at biojava.org 
	Cc: 
	Subject: [Biojava-l] How to combine multiple Sequence objects into a singleSequence object?
	
	

	Hello,
	
	I'm trying to create a genome viewer by importing EMBL files using the
	SeqIOTools.readEmbl function. This gives me an iterator over the
	sequences in the embl file. The embl files I am using are split up in
	several sections within the embl file ('section 1 of 109 of the complete
	genome' etc).
	
	Does anyone know how to combine multiple Sequence objects into a single
	Sequence object?
	
	Thanks & best regards,
	Daniel Kiviet
	
	
	
	--------------------
	Daniel Kiviet
	ANU, Canberra ACT , Australia
	
	
	_______________________________________________
	Biojava-l mailing list  -  Biojava-l at biojava.org
	http://biojava.org/mailman/listinfo/biojava-l
	


=======================================================================
Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. =======================================================================

_______________________________________________
Biojava-l mailing list  -  Biojava-l at biojava.org http://biojava.org/mailman/listinfo/biojava-l