[Biojava-l] How to combine multiple Sequence objects into a singleSequence object?

[Schreiber, Mark]

Hi -
 
We get asked this a lot. Unfortunately there isn't an easy solution. If you have access to all of the files referenced in the main EMBL file then you could write a simple program to retrieve and open them all and then use something like Edit functions to join them together.
 
- Mark
 

	-----Original Message----- 
	From: Daniel Kiviet [mailto:kiviet at science.uva.nl] 
	Sent: Sat 18/10/2003 4:21 a.m. 
	To: biojava-l at biojava.org 
	Cc: 
	Subject: [Biojava-l] How to combine multiple Sequence objects into a singleSequence object?
	
	

	Hello,
	
	I'm trying to create a genome viewer by importing EMBL files using the
	SeqIOTools.readEmbl function. This gives me an iterator over the
	sequences in the embl file. The embl files I am using are split up in
	several sections within the embl file ('section 1 of 109 of the complete
	genome' etc).
	
	Does anyone know how to combine multiple Sequence objects into a single
	Sequence object?
	
	Thanks & best regards,
	Daniel Kiviet
	
	
	
	--------------------
	Daniel Kiviet
	ANU, Canberra ACT , Australia
	
	
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