[Biojava-l] Build errors

Andy Hammer facemann at yahoo.com
Tue Oct 14 21:46:20 EDT 2003


As some have suggested, I checked the following:
I have the bytecode.jar file as  shown
-rwxrwxr-x    1 ahammer  ahammer       91K Jul 28
08:18 bytecode.jar

My PATH has no old biojava.jar references
PATH =
.:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/home/ahammer/bin:/usr/java/bin:/usr/ant/bin
Also the java/jre/lib/ext directory is devoid of any
biojava.jars

I get the errors:
compile-biojava:
    [javac] Compiling 1099 source files to
/home/ahammer/downloads/biojava-live/ant-build/classes/biojava
    [javac] depend attribute is not supported by the
modern compiler
    [javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:9:
package org.biojava.ontology.format.triples.lexer does
not exist
    [javac] import
org.biojava.ontology.format.triples.lexer.Lexer;
    [javac]                                           
      ^
    [javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:10:
package org.biojava.ontology.format.triples.lexer does
not exist
    [javac] import
org.biojava.ontology.format.triples.lexer.LexerException;
    [javac]                                           
      ^
    [javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:11:
package org.biojava.ontology.format.triples.parser
does not exist
    [javac] import
org.biojava.ontology.format.triples.parser.Parser;
    [javac]                                           
       ^
    [javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:12:
package org.biojava.ontology.format.triples.parser
does not exist

. . .
many more
. . .
ending with
    [javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:392:
cannot resolve symbol
    [javac] symbol  : class ACompoundFullName
    [javac] location: class
org.biojava.ontology.io.TriplesParser.Processor
    [javac]         ACompoundFullName fn =
(ACompoundFullName) fullName;
    [javac]         ^
    [javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:392:
cannot resolve symbol
    [javac] symbol  : class ACompoundFullName
    [javac] location: class
org.biojava.ontology.io.TriplesParser.Processor
    [javac]         ACompoundFullName fn =
(ACompoundFullName) fullName;
    [javac]                                 ^
    [javac]
/home/ahammer/downloads/biojava-live/ant-build/src/biojava/org/biojava/ontology/io/TriplesParser.java:408:
cannot resolve symbol
    [javac] symbol  : class AIntegerLiteralValue
    [javac] location: class
org.biojava.ontology.io.TriplesParser.Processor
    [javac]       if(v instanceof
AIntegerLiteralValue) {
    [javac]                       ^
    [javac] 100 errors

Any suggestions?  

Andy


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