[Biojava-dev] [JIRA] (TAS-344) biojava with Java 8

[Terry Casstevens]

Dear Biojava Developers,

We are using the biojava libraries below with Java 8, and we are getting
the following exception.   Do you what is our problem?

biojava3-alignment-3.0.8.jar
biojava3-core-3.0.8.jar
biojava3-phylo-3.0.8.jar
forester_1030.jar


java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError:
Could not initialize class
org.biojava3.core.sequence.location.SimpleLocation
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at org.biojava3.alignment.Alignments.getListFromFutures(Alignments.java:282)
at org.biojava3.alignment.Alignments.runPairwiseScorers(Alignments.java:602)
at
org.biojava3.alignment.Alignments.getMultipleSequenceAlignment(Alignments.java:173)
at net.maizegenetics.dna.map.TagLocus.getVariableSites(TagLocus.java:501)
at net.maizegenetics.dna.map.TagLocus.getSNPCallsQuant(TagLocus.java:297)


Thank you,

Terry



On Mon, May 5, 2014 at 11:28 AM, Terry Casstevens <tmc46 at cornell.edu> wrote:

> I downloaded these libraries to try with the GBS Pipeline...
>
> biojava3-alignment-3.0.8.jar
> biojava3-core-3.0.8.jar
> biojava3-phylo-3.0.8.jar
> forester_1030.jar
>
>
> Under Java 7, GBS Pipeline runs but yields different results than previous
> libraries. Didn't check to see how different.
>
> Under Java 8, Same problem as before
> "java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError:
> Could not initialize class
> org.biojava3.core.sequence.location.SimpleLocation"
>
> Also, the new forester library still exits Tassel when you close it.
>
>
> Best,
>
> Terry
>
>
>