[Biojava-dev] How to start opensourcing with biojava

[Andreas Prlic]

Hi Pawel,

The features on that list all have to do more with file parsing and
less with multi-threaded programming and algorithms. As such not sure
if any of them is a good match for you. If you want to take a look at
something that is algorithmic and multi-threaded, the multiple
sequence alignment module would fullfil both criteria...

Andreas



On Thu, Oct 18, 2012 at 3:55 AM, Paweł Henek <pawelhenek at gmail.com> wrote:
> Welcome everyone,
>
> I am writing to you, because I need an advice from more experienced
> developers.
> I plan to start my experience with bioinformatics and open source software
> development.
> I'm third year student of CS with one and half year of commercial
> experience in Java.
> On my university I have a project to realization in next 3 months, and I
> thought about topics from biojava project.
>
> I want to practice knowledge from areas such as java.io , threads and
> algorithms.
> Reviewing biojava project I've found few topics that I could choose,
> unfortunately I cannot estimate an effort needed to complete
> project in time.
>
> Could you recommend me which topic is good to start with biojava, of course
> taking into account these 3 months of deadline?
>
> - Genbank parser
> - Stockholm file format parser
> - CATH parser
> - Balibase
> - UniProt (XML/txt)
>
> Thanks all for response
> _______________________________________________
> biojava-dev mailing list
> biojava-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-dev