[Biojava-dev] starting to prepare next BioJava release

[Thornton Robert]

I'm interested in this effort.  This would be a great way to grow my knowledge of bioinformatics.  We should be able to use unit tests to ensure we're preserving the semantics of the algorithms during the port.

Regards,
Rob


On  7  Feb 2012, at 13:43, Andreas Prlic wrote:

> Hi Scooter,
> 
> good idea, what about setting up a wiki page and collecting a list of
> possible algorithms for Java porting?
> 
> Andreas
> 
> 
> 
> On Tue, Feb 7, 2012 at 4:16 AM, Scooter Willis <HWillis at scripps.edu> wrote:
>> Andreas
>> 
>> It would be good to allocate a project for porting and could be a great
>> way to introduce an individual with solid computational background but
>> limited bioinformatics to the group.
>> 
>> Scooter
>> 
>> On 2/7/12 2:08 AM, "Andreas Prlic" <andreas at sdsc.edu> wrote:
>> 
>>> Hi,
>>> 
>>> I would like to start preparing another BioJava release (3.0.3) -
>>> 
>>> the main new features of this release will be
>>> 
>>> - significant improvements to the web service module (ncbi blast and
>>> hmmer web services)
>>> - "new" fastq parser (ported from the biojava 1 series to version 3),
>>> - as well as numerous improvements all over the place.
>>> - (did I miss any other major recent commits?)
>>> 
>>> Prior to release would be great to add more documentation. Any
>>> volunteers to bring the documentation for (some of) the new features
>>> up to date and polish the existing docu?
>>> 
>>> Andreas
>>> _______________________________________________
>>> biojava-dev mailing list
>>> biojava-dev at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>> 
> 
> 
> 
> -- 
> -----------------------------------------------------------------------
> Dr. Andreas Prlic
> Senior Scientist, RCSB PDB Protein Data Bank
> University of California, San Diego
> (+1) 858.246.0526
> -----------------------------------------------------------------------
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