[Biojava-dev] starting to prepare next BioJava release

Andreas Prlic andreas at sdsc.edu
Tue Feb 7 18:43:05 UTC 2012


Hi Scooter,

good idea, what about setting up a wiki page and collecting a list of
possible algorithms for Java porting?

Andreas



On Tue, Feb 7, 2012 at 4:16 AM, Scooter Willis <HWillis at scripps.edu> wrote:
> Andreas
>
> It would be good to allocate a project for porting and could be a great
> way to introduce an individual with solid computational background but
> limited bioinformatics to the group.
>
> Scooter
>
> On 2/7/12 2:08 AM, "Andreas Prlic" <andreas at sdsc.edu> wrote:
>
>>Hi,
>>
>>I would like to start preparing another BioJava release (3.0.3) -
>>
>>the main new features of this release will be
>>
>>- significant improvements to the web service module (ncbi blast and
>>hmmer web services)
>>- "new" fastq parser (ported from the biojava 1 series to version 3),
>>- as well as numerous improvements all over the place.
>>- (did I miss any other major recent commits?)
>>
>>Prior to release would be great to add more documentation. Any
>>volunteers to bring the documentation for (some of) the new features
>>up to date and polish the existing docu?
>>
>>Andreas
>>_______________________________________________
>>biojava-dev mailing list
>>biojava-dev at lists.open-bio.org
>>http://lists.open-bio.org/mailman/listinfo/biojava-dev
>



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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank
University of California, San Diego
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