[Biojava-dev] porting HMM classes from bj1.8 to bj3

[Scooter Willis]

I think first step is to take the HMM classes from 1.8 and migrate with
zero dependencies of any non HMM classes in Biojava 1.8. If you can it to
compile with a minimal number of external packages then migration as a
standalone module should be easy. If you work with Strings as inputs that
should help minimize dependencies.

On 8/12/11 10:45 AM, "zhihuali" <lzhtom at hotmail.com> wrote:

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>Dear all,
>
>I have been trying to post this message several times now but couldn't
>see it in the list. Hopefully this time it will get through. If you
>received 
>multiple copies of this email please forgive me.
>
>I was pointed to here by Andreas and Sylvain from LinkedIn.
>Basically we felt that a great missing piece in bj3 from legacy biojava
>is HMM classes. And I'd like to take on this task. Maybe the first
>thing is to migrate bj1.8's dp package and related packages to bj3.
>Could anyone give me directions to get it started?
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>Thanks a lot!
>
>Zhihua Li