[Biojava-dev] biojava SVN

[Scooter Willis]

I will send an email off to Forester developer to see if he wants to leverage the work where he can indicate the location for the maven repository. It would be nice to get him in the officially in the BioJava family. That way he may be willing to support and update it. It would be nice to not have "source" code for forester in our build unless we plan on doing some work on the code. The code is very solid and feature complete so I don't imagine we will have that requirement.

Scooter

On May 5, 2010, at 11:33 AM, Andy Yates wrote:

> Ah fair enough. So Jmol should be okay so long as we can get the okay from those guys. Forester is a bit harder since there is no official release of that code. However I thought that code base had been committed into our repo.
> 
> Andy
> 
> On 5 May 2010, at 16:22, Andreas Prlic wrote:
> 
>> Hi Andy,
>> 
>> I am talking about biojava3:  the structure-gui module requires a
>> visualization library (Jmol) and  phylo  depends on forester...
>> 
>> Andreas
>> 
>> On Wed, May 5, 2010 at 12:59 AM, Andy Yates <ayates at ebi.ac.uk> wrote:
>>> Which 3rd party jars? Looking at the dependency list of the core 3rd party dependencies which were not in maven central was 0 (apart from bytecode).
>>> 
>>> Andy
>>> 
>>> On 5 May 2010, at 05:38, Andreas Prlic wrote:
>>> 
>>>>> Right, but that helps only temporarily.  We can't have any non-maven
>>>>> central repositories or any non-maven central repo dependencies if you
>>>>> want to rsync a local repo to maven central.
>>>>> 
>>>> 
>>>> Ok. Is it at all possible to upload 3rd party jars to the central repo?
>>>> 
>>>> 
>>>>> If we are setting up a local repo, I would recommend installing Nexus.
>>>>> 
>>>> 
>>>> I  will try to talk to the BioMoby guys about what they are using for their
>>>> repository...
>>>> 
>>>> In the meanwhile I started to play around with an biojava specific
>>>> repository...
>>>> http://www.biojava.org/download/maven/
>>>> 
>>>> Andreas
>>>> _______________________________________________
>>>> biojava-dev mailing list
>>>> biojava-dev at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>>> 
>>> --
>>> Andrew Yates                   Ensembl Genomes Engineer
>>> EMBL-EBI                       Tel: +44-(0)1223-492538
>>> Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
>>> Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/
>>> 
>>> 
>>> 
>>> 
>>> 
>> 
>> 
>> 
>> -- 
>> -----------------------------------------------------------------------
>> Dr. Andreas Prlic
>> Senior Scientist, RCSB PDB Protein Data Bank
>> University of California, San Diego
>> (+1) 858.246.0526
>> -----------------------------------------------------------------------
> 
> -- 
> Andrew Yates                   Ensembl Genomes Engineer
> EMBL-EBI                       Tel: +44-(0)1223-492538
> Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
> Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/
> 
> 
> 
> 
> 
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