[Biojava-dev] Reg: Quality values of ABI File

[Franklin Bristow]

Hi Sreekanth,
The quality values are stored under the PCON 1 and 2 tags.  The information
you need is in the offsetData field of the TaggedDataRecord.  You can treat
this byte array as an array of shorts containing the quality values for each
base.

Take a look at this PDF for more information about the different tags
available to you:
http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf

-- 
Franklin

On Mon, Jul 13, 2009 at 6:28 AM, Sreekanth Mogullapally <
sreekanth.m at ocimumbio.com> wrote:

> Hi Everybody,
>
> I am working with "ABI" Files. I am able to get the pixel values for
> Chromatogram viewer from it,
> but I need the Quality values for each base.
> Please help me in this regard.
>
> Thanks in Advance
> Sreekanth.M
>
>
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