[Biojava-dev] Reg: SeqIOTools Class

[mark.schreiber at novartis.com]

Hi -

The replacement for this class is RichSequence.IOTools

- Mark


biojava-dev-bounces at lists.open-bio.org wrote on 07/16/2009 02:07:19 PM:

> 
> Hi Everybody,
> 
> I am newly working with biojava. While I am trying to read Fasta 
> file using biojava with following code
> 
> SequenceIterator stream = SeqIOTools.readFastaDNA(new 
> BufferedReader(new FileReader(fileName)));
> 
> for this I am importing following class
> import org.biojava.bio.seq.io.SeqIOTools;
> But it is showing a warning that "SeqIOTools" is deprecated.
> 
> Is there any other class which satisfies all the functionality of 
> "SeqIOTools" class.
> 
> Please suggest me in this regard.
> 
> Thanks in Advance
> Sreekanth. M
> 
> 
> 
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