[Biojava-dev] Reg: SeqIOTools Class

Sreekanth Mogullapally sreekanth.m at ocimumbio.com
Thu Jul 16 02:07:19 EDT 2009


Hi Everybody,

I am newly working with biojava. While I am trying to read Fasta file using biojava with following code

SequenceIterator stream = SeqIOTools.readFastaDNA(new BufferedReader(new FileReader(fileName)));

for this I am importing following class
import org.biojava.bio.seq.io.SeqIOTools;
But it is showing a warning that "SeqIOTools" is deprecated.

Is there any other class which satisfies all the functionality of "SeqIOTools" class.

Please suggest me in this regard.

Thanks in Advance
Sreekanth. M





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