[Biojava-dev] Helps needed for NexusParser

[Mark Schreiber]

Hi -

The phylo package was omitted from the biojava1.5 build but it is
still accessible form the biojava-live distribution on CVS.

If you have CVS access you should be able to get it. Additionally you
can build any docs using JavaDoc or better yet build the entire
package with Ant using the build.xml file.

- Mark

On 6/20/07, blee34 at mail.gatech.edu <blee34 at mail.gatech.edu> wrote:
>
> Dear group,
>
> Hi, I'm a GSOC student Bohyun participating in BioJava project (as a part of
> NESCent phyloinformatics work) for this summer!
>
> I need some helps using (Nexus) TAXA Block Parser (which were included in
> BioJava1.5-beta2). Can anyone give me a sample code for Parsing a TAXA Block?
>
> What I am trying to do now is to parse a TAXA block and construct a phylo tree
> by
> using methods like UPGMA, Neighbor-Joining.
> (http://biojava.org/wiki/BioJava:PhyloSOC07)
>
> Also, I'd appreciate if there's anyone who can tell me where to find javadoc
> pages for biojavax.phylo package. (It was there on the wiki with
> Biojava1.5-beta2 release. I heard that It's been temporarily omitted for the
> BioJava1.5 version, but I'd like to get those files for the reference.)
>
> Thank you very much for your help.
>
> Best regards,
> Bohyun
> _______________________________________________
> biojava-dev mailing list
> biojava-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>