[Biojava-dev] [Bug 2164] Restriction Mapper - Thread (or dual core cpu) problem

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2164





------- Comment #6 from jguinney at gmail.com  2006-12-13 16:53 -------
I wouldn't be too hasty to roll back the previous correction.  The problem with
the call to a non-thread safe method stands (and hence the need to synchronize
on 'target'); the ArrayIndexOutOfBoundsException in the call to
SimpleFeatureHolder.addFeature() is highly indicative of this.  

This might suggest other calls to non-thread safe data structures; could be
SymbolListCharSequence since it wraps target (which might explain the null
pointer exception).

(In reply to comment #5)
> OK, I have rolled back the changes I committed earlier as they obviously also
> caused single-thread to hang. I have no idea how to proceed though.
> Suggestions, anyone?
> 


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.