[Biojava-dev] Trouble compiling biojava demos
GREG OMENKEUKWU
gregsnips at yahoo.com
Mon Sep 12 22:32:57 EDT 2005
I am new to biojava and I am having a little problem
with the sample applications.
I tried compiling the samples in the bioja demos but I
keep getting the following errors. I will appreciate
any help I get on this issue. Thanks.
C:\biojava-1.00\demos>javac seq\TestEmbl.java
seq\TestEmbl.java:18: cannot find symbol
symbol : class EmblFormat
location: class seq.TestEmbl
SequenceFormat eFormat = new EmblFormat();
^
seq\TestEmbl.java:21: cannot find symbol
symbol : class SimpleSequenceFactory
location: class seq.TestEmbl
SequenceFactory sFact = new
SimpleSequenceFactory();
^
seq\TestEmbl.java:23: cannot find symbol
symbol : class SymbolParser
location: class seq.TestEmbl
SymbolParser rParser = alpha.getParser("token");
^
seq\TestEmbl.java:23: cannot find symbol
symbol : method getParser(java.lang.String)
location: interface org.biojava.bio.symbol.Alphabet
SymbolParser rParser = alpha.getParser("token");
^
seq\TestEmbl.java:25: internal error; cannot
instantiate org.biojava.bio.seq.io.
StreamReader.<init> at
org.biojava.bio.seq.io.StreamReader to ()
new StreamReader(eReader, eFormat, rParser,
sFact);
^
5 errors
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