[Biojava-dev] Trouble compiling biojava demos

GREG OMENKEUKWU gregsnips at yahoo.com
Mon Sep 12 22:32:57 EDT 2005


I am new to biojava and I am having a little problem
with the sample applications.
I tried compiling the samples in the bioja demos but I
keep getting the following errors. I will appreciate
any help I get on this issue. Thanks.
C:\biojava-1.00\demos>javac seq\TestEmbl.java
seq\TestEmbl.java:18: cannot find symbol
symbol  : class EmblFormat
location: class seq.TestEmbl
      SequenceFormat eFormat = new EmblFormat();
                                   ^
seq\TestEmbl.java:21: cannot find symbol
symbol  : class SimpleSequenceFactory
location: class seq.TestEmbl
      SequenceFactory sFact = new
SimpleSequenceFactory();
                                  ^
seq\TestEmbl.java:23: cannot find symbol
symbol  : class SymbolParser
location: class seq.TestEmbl
      SymbolParser rParser = alpha.getParser("token");
      ^
seq\TestEmbl.java:23: cannot find symbol
symbol  : method getParser(java.lang.String)
location: interface org.biojava.bio.symbol.Alphabet
      SymbolParser rParser = alpha.getParser("token");
                                  ^
seq\TestEmbl.java:25: internal error; cannot
instantiate org.biojava.bio.seq.io.
StreamReader.<init> at
org.biojava.bio.seq.io.StreamReader to ()
        new StreamReader(eReader, eFormat, rParser,
sFact);
        ^
5 errors


		
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