[Biojava-dev] dazzle & ensembl version >= 26

[Michael Heuer]

False alarm, was a configuration error.

   michael


On Mon, 3 Jan 2005, Michael Heuer wrote:

> Hello,
>
> It appears that the dazzle reference server needs a few tweaks in order to
> work with ensembl databases version >= 26.  I'm using a version compiled
> from cvs & svn head from a while back when ensembl version 24 came out.  I
> am investigating...
>
>    michael
>
>
> exception
> javax.servlet.ServletException:
> org.biojava.bio.seq.db.ensembl.spi.AdaptorException: Couldn't fetch coordinate systems.
>         org.biojava.servlets.dazzle.DazzleServlet.entryPointsCommand(DazzleServlet.java:1729)
>         org.biojava.servlets.dazzle.DazzleServlet.doGet(DazzleServlet.java:261)
>         javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
>         javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>
> root cause
> org.biojava.bio.BioRuntimeException:
> org.biojava.bio.seq.db.ensembl.spi.AdaptorException: Couldn't fetch coordinate systems.
>         org.ensembl.das.EnsemblCoreReference.getEntryPoints(EnsemblCoreReference.java:150)
>         org.biojava.servlets.dazzle.DazzleServlet.entryPointsCommand(DazzleServlet.java:1714)
>         org.biojava.servlets.dazzle.DazzleServlet.doGet(DazzleServlet.java:261)
>         javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
>         javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>
>
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