[Biojava-dev] dazzle & ensembl version >= 26

[Michael Heuer]

Hello,

It appears that the dazzle reference server needs a few tweaks in order to
work with ensembl databases version >= 26.  I'm using a version compiled
from cvs & svn head from a while back when ensembl version 24 came out.  I
am investigating...

   michael


exception
javax.servlet.ServletException:
org.biojava.bio.seq.db.ensembl.spi.AdaptorException: Couldn't fetch coordinate systems.
        org.biojava.servlets.dazzle.DazzleServlet.entryPointsCommand(DazzleServlet.java:1729)
        org.biojava.servlets.dazzle.DazzleServlet.doGet(DazzleServlet.java:261)
        javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
        javax.servlet.http.HttpServlet.service(HttpServlet.java:802)

root cause
org.biojava.bio.BioRuntimeException:
org.biojava.bio.seq.db.ensembl.spi.AdaptorException: Couldn't fetch coordinate systems.
        org.ensembl.das.EnsemblCoreReference.getEntryPoints(EnsemblCoreReference.java:150)
        org.biojava.servlets.dazzle.DazzleServlet.entryPointsCommand(DazzleServlet.java:1714)
        org.biojava.servlets.dazzle.DazzleServlet.doGet(DazzleServlet.java:261)
        javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
        javax.servlet.http.HttpServlet.service(HttpServlet.java:802)