[Biojava-dev] Chromatogram packages nearly ready to go

[Schreiber, Mark]

Hi -

I think the org.biojava.programs is the BioJava way to go. Probably more
by default than convention, it just seems to be where a lot of our
format handling stuff has ended up, eg GFF, Phred, HMMER etc

- Mark


> -----Original Message-----
> From: Rhett Sutphin [mailto:rhett-sutphin at uiowa.edu] 
> Sent: Tuesday, 18 March 2003 5:45 a.m.
> To: Matthew Pocock
> Cc: biojava-dev at biojava.org
> Subject: Re: [Biojava-dev] Chromatogram packages nearly ready to go
> 
> 
> Hi Matthew,
> 
> On Monday, March 17, 2003, at 11:29  AM, Matthew Pocock wrote:
> > The packages look prety good to me. Personaly, I'd be temted to make
> > the two format packages children of teh chromatogram one, 
> but I don't 
> > think we have any policies for this sort of thing, so either way is 
> > fine with me.
> 
> That's the way I originally had it (actually, I had a chromat.formats 
> package that contained both).  I changed it because the bio.programs 
> option seemed to be "the biojava way."  Even if we went back to a 
> subpackage of chromatogram, I'd still suggest that ABIFParser 
> should go 
> in programs.abi because it might be useful in parsing other 
> ABI files.  
> Any other opinions out there?
> 
> > I look forward to playing with this.
> 
> I hope it is as useful as you expect.
> 
> Rhett
> 
> --
> Rhett Sutphin
> Research Assistant (Software)
> Coordinated Laboratory for Computational Genomics
>    and the Center for Macular Degeneration
> University of Iowa - Iowa City, IA 52242 - USA
> 4111 MEBRF - email: rhett-sutphin at uiowa.edu
> 
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> 
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