[Biojava-dev] Mismatches between bytecode.jar versions

[David Huen]

It appears that there may be some problems with the bytecode.jar
versioning.

Biojava-live will compile with the bytecode.jar that is in biojava-live/
in the dev repository (size 94613 bytes).  It does not compile with the
bytecode.jar that is compiled from source in the bytecode module in dev
(size 93458 bytes).

Can the correct version be established and the source and binaries sync'd
up?  They can't both be right.

Here's the error log:-
compile:
    [javac] Compiling 1077 source files to
/home/davidh/biocvs/biojava-live/ant-build/classes/main
    [javac]
/home/davidh/biocvs/biojava-live/ant-build/src/main/org/biojava/bio/seq/projection/ProjectionEngine.java:198:
cannot resolve symbol
    [javac] symbol  : class SimpleCodeMethod
    [javac] location: class
org.biojava.bio.seq.projection.ProjectionEngine
    [javac]         CodeMethod m_ourBase_init = new SimpleCodeMethod(
    [javac]                                         ^
    [javac]
/home/davidh/biocvs/biojava-live/ant-build/src/main/org/biojava/bio/seq/projection/ProjectionEngine.java:204:
cannot resolve symbol
    [javac] symbol  : class SimpleCodeMethod
    [javac] location: class
org.biojava.bio.seq.projection.ProjectionEngine
    [javac]         CodeMethod m_ourBase_getViewedFeature = new
SimpleCodeMethod(
    [javac]                                                     ^
    [javac]
/home/davidh/biocvs/biojava-live/ant-build/src/main/org/biojava/bio/seq/projection/ProjectionEngine.java:211:
cannot resolve symbol
    [javac] symbol  : class SimpleCodeMethod
    [javac] location: class
org.biojava.bio.seq.projection.ProjectionEngine
    [javac]         CodeMethod m_ourBase_getProjectionContext = new
SimpleCodeMethod(
    [javac]                                                         ^
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -deprecation for details.
    [javac] 3 errors


Rgds,
DH