[Biojava-dev] Count.java, Distribution.java and Alignment.java

[Schreiber, Mark]

> > Finally, in Alignment.java, there are two methods, which use 
> > inconsitent container classes for the labels of the alignment.
> > 
> > java.util.List getLabels()
> > 
> > Alignment subAlignment(java.util.Set labels, Location loc)
> > 
> > so that to get a subAlignment over all labels, you have to 
> convert a 
> > List to a Set.
> 
> I think it's subAlignment that should be a List. 
> Unfortunately, we can't 
> fix this right now as it would change the API while we're 
> trying to get 
> the 1.3 release out of the door. Once 1.3 hits the street, 
> feel free to 
> change it (leave the old method in with a @deprecated for a while).

I'm not sure I care either way but I think a Set is more logical. I'm
assuming the labels should be unique.

- Mark


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