[Biojava-dev] abi trace viewer

[Schreiber, Mark]

> Hi,
> 
> I stumbled uppon the abi package today - someone came
> to me with 40 trace fiels and said they wanted them
> blasted. No fasta ;-)
> 
> So, in a fit of righeous boredom, I decided to write a
> trace renderer. It's checked in as 
> org.biojava.bio.gui.sequence.AbiTraceRenderer, and there's a 
> demo seqviewer.TraceViewer that shows that it doesn't crash.

This truly is Righteous,

Just a few humble comments.  Color.BLACK in java 1.3 is Color.black
(stupid I know). I have fixed these in the CVS. Another problem is that
all the peaks appear to go to the top of the screen when they have no
signal instead of going to the bottom of the screen. Finaly to be
completely pedantic the standard colour scheme (if there can be said to
be such a thing) is:

C = blue
G = black
A = green
T = red

So despite my quibbling, top effort!

- Mark
=======================================================================
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.
=======================================================================