[Biocorba-l] Persistent IOR for the EMBL Biocorba server (fwd)

[Jason Stajich]

On Sun, 27 May 2001, Ewan Birney wrote:

> 
> Below is the URL location of a persistent (I believe in a sort of day-long
> persistence manner - alan can feel us in on the details) for the biocorba
> 0.2 IOR of the EMBL server.
> 
> 
> Alan - what is the persistence of this IOR (days? weeks? years?) and how
> often is the EMBL DB replicated to this server?
> 
> 
> 
> This means we should be able to build pacakges/systems that can
> automatically "find" EMBL and server sequences out straight from the
> package, which I think would be a great benefit for people.
> 
Where do you think would be the best place to distribute the scripts from.
BioCORBA website (Which NEEEDS some work), or from language projects
pages?
 > 
> Jason - I am thinking that this coming release of bioperl we should have a 
> real plug'n'play bioperl-corba-client package that you can just drop in
> and have work with some scripts ready-to-go 
> 
Okay, definitely on my todo list.  

> 
> Brad - I'm happy to work with this on biopython as well
> 
> 
> What is the status of the biojava corba client layer? Has this stalled?
> 

I'll have to ask Harold - he has something that definitely works, not sure
if it is completely implemented though.

> 
> (hmmm... is any emboss people tuned in ... we should get that hooked up as
> well).
> 
yes please.

> 
> Perhaps we should also make a distribution of example clients which do not
> have bindings to their respective project libraries but are "just
> biocorba" only.
> 
This was piece of cake for the ensembl java bindings I did, but that was
useful because we were using it for cross-language data access.  What is
to be gained from biocorba only bindings?  Obviously only useful as
clients - and the only data source right now is EMBL db (which may be
enough).  We ought to think about what other data sources would be nicely
accessible through a generic CORBA layer too...

> 
> 
> 
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>. 
> -----------------------------------------------------------------
> 
> ---------- Forwarded message ----------
> Date: Thu, 24 May 2001 22:35:06 +0100 (GMT Daylight Time)
> From: Alan Robinson <alan@ebi.ac.uk>
> To: Ewan Birney <birney@sanger.ac.uk>
> Subject: Persistent IOR for the EMBL Biocorba server
> 
> 
> Persistent IOR for the EMBL server using Biocorba-0.2.0:
> 
>   http://corba.ebi.ac.uk/IOR/EmblBiocorba_v0_2.IOR
> 
> 
> --
> ============================================================
> Alan J. Robinson, D.Phil.             Tel:+44-(0)1223 494444
> European Bioinformatics Institute     Fax:+44-(0)1223 494468
> EMBL Outstation - Hinxton             Email:  alan@ebi.ac.uk
> Wellcome Trust Genome Campus
> Hinxton, Cambridge
> CB10 1SD, UK                http://industry.ebi.ac.uk/~alan/
> ============================================================                   
> 
> 
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Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center 
http://www.chg.duke.edu/