[Bio-packaging] GNU Guix update

Pjotr Prins pjotr.public66 at thebird.nl
Sun Jul 5 07:43:38 UTC 2015


Since June 21st some significant work went into GNU Guix. Of
interest are:

1. A thread on the mailing list started by Malcolm on security for
   (scientific) clusters

    http://lists.gnu.org/archive/html/guix-devel/2015-07/msg00072.html

2. I am continuing to document how to build an environment for Ruby 
   based on the Nokogiri gem, see

    https://github.com/pjotrp/guix-notes/blob/master/RUBYGEMS-Nokogiri.org

3. The following packages were added

   For bioinformatics

      WarpedLMM (Ricardo)
      Blast+ (Ricardo)
      plink (Ricardo)

      http://git.savannah.gnu.org/cgit/guix.git/log/gnu/packages/bioinformatics.scm

   For Ruby

      ruby-rake-compiler (Pjotr)
      ruby 2.1.6 (Pjotr)

      http://git.savannah.gnu.org/cgit/guix.git/log/gnu/packages/ruby.scm

   For Python

      python2-fastlmm (Ricardo)
      python2-pysnptools (Ricardo)

      http://git.savannah.gnu.org/cgit/guix.git/log/gnu/packages/python.scm

Finally, the coming week is the 2015 codefest/BOSC in Dublin

    http://www.open-bio.org/wiki/BOSC_2015

I hope to put in a good word for GNU Guix and biopackaging.

Pj.



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