[Bio-packaging] GNU Guix update
Pjotr Prins
pjotr.public66 at thebird.nl
Sun Jul 5 07:43:38 UTC 2015
Since June 21st some significant work went into GNU Guix. Of
interest are:
1. A thread on the mailing list started by Malcolm on security for
(scientific) clusters
http://lists.gnu.org/archive/html/guix-devel/2015-07/msg00072.html
2. I am continuing to document how to build an environment for Ruby
based on the Nokogiri gem, see
https://github.com/pjotrp/guix-notes/blob/master/RUBYGEMS-Nokogiri.org
3. The following packages were added
For bioinformatics
WarpedLMM (Ricardo)
Blast+ (Ricardo)
plink (Ricardo)
http://git.savannah.gnu.org/cgit/guix.git/log/gnu/packages/bioinformatics.scm
For Ruby
ruby-rake-compiler (Pjotr)
ruby 2.1.6 (Pjotr)
http://git.savannah.gnu.org/cgit/guix.git/log/gnu/packages/ruby.scm
For Python
python2-fastlmm (Ricardo)
python2-pysnptools (Ricardo)
http://git.savannah.gnu.org/cgit/guix.git/log/gnu/packages/python.scm
Finally, the coming week is the 2015 codefest/BOSC in Dublin
http://www.open-bio.org/wiki/BOSC_2015
I hope to put in a good word for GNU Guix and biopackaging.
Pj.
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