[BioSQL-l] a biosql/biojavax localization question

[Hilmar Lapp]

Hi David, sorry for dropping (or rather, not ever picking up) the  
ball on this ... got lost in inbox stack.

The earlier consensus was if I recall correctly to include  
is_circular as a biosequence attribute in the 1.1 version.

isTaxonHidden is new to me and I don't even understand what it would  
mean. Can you elaborate?

	-hilmar

On Jun 21, 2006, at 11:19 AM, David Scott wrote:

> biojavax is using hibernate to o/r map the biosql database to biojavax
> objects. biojavax is planning support in the biojavax objects for  
> fields
> not directly supported in the biosql database (e.g. isCircular,
> isTaxonHidden). in order to conform to the current biosql database,  
> the
> default mapping file from biosql to biojavax will comment out the
> unsupported fields (so the object fields will not be initialized) and
> the objects will default an appropriate conforming value (e.g.  
> false for
> isCircular and isTaxonHidden). for users wishing to localize biojavax:
> the user would uncomment the mapping file and alter the database  
> tables.
> altering the database would require running ddl on the existing  
> database
> to create the new table columns. what is the best way to review and  
> then
> distribute the alter/create ddl for users to localize their database?
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-- 
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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