[BioSQL-l] load_ncbi_taxonomy.pl

[Mauricio Herrera Cuadra]

The script isn't included in bioperl-db, it's located in the scripts 
directory for the biosql-schema distribution.

Regards,
Mauricio.

Gerben Menschaert wrote:
> Hello,
> 
> In the bioperl-db INSTALL file I saw that it's necessary to preload the ncbi
> taxonomy:
> 
> ####################################################
> LOAD THE NCBI TAXONOMY
> You should pre-load the NCBI taxonomy database using the
> scripts/load_ncbi_taxonomy.pl script in the BioSQL package.
> Otherwise you will see errors from mis-parsed organisms when you
> attempt to load sequences.
> ####################################################
> 
> I cannot find this load_ncbi_taxonomy.pl script. Is this (parsing the
> organism info correctly) taken care of in the load_seqdatabase.pl script
> now?
> 
> Regs,
> Gerben Menschaert
> 
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> 

-- 
MAURICIO HERRERA CUADRA
arareko at campus.iztacala.unam.mx
Laboratorio de Genética
Unidad de Morfofisiología y Función
Facultad de Estudios Superiores Iztacala, UNAM