[Biopython] remote blast against SRA database with biopython

Peter Cock p.j.a.cock at googlemail.com
Sun Dec 21 21:55:51 UTC 2014


On Sun, Dec 21, 2014 at 9:10 PM, assaf www <assafwww at gmail.com> wrote:
> Christopher, I was not aware of eutils einfo, I assume you mean the following?
> http://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.EInfo
> I will look into it.

Biopython has Bio.Entrez for accessing this in Python code.

> Peter, I wouldn't mind contributing functions when I figure out what
> should be done here, though my knowledge/experience of how to look at
> biopython from the developer side is zero, so i may mainly cause
> damage :)
>
> Assaf

This may not be the easiest task to attempt - but have a go,
you're not going to break things for anyone else (even if
you do have to reinstall Biopython on your own machine).

Good luck,

Peter


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