[Biopython] OrthoXML parser?

[Philipp Schiffer]

Hi! 

Thanks a lot (actually should have seen this myself). Just checked out the latest (I think) biopython from git, but only seem to find SeqXML there:
- seqxml  - SeqXML, simple XML format described in Schmitt et al (2011).
But no OrthoXML. Or am I not seeing it?

Best

Philipp

-- 
Philipp Schiffer
Sent with Sparrow (http://www.sparrowmailapp.com/?sig)


On Friday, 14. June 2013 at 16:08, Nick Lindberg wrote:

> Looks like there is a patch for Biopython that will give you OrthoXLM and
> SeqXML support, but you'll have to do it yourself:
> 
> http://seqxml.org/xml/Biopython_Old.html
> 
> 
> Perhaps it's already in the latest release? I'm not at my machine so I
> can't check.
> 
> Nick Lindberg
> Sr. Consulting Engineer, HPC
> Milwaukee Institute
> 414.727.6413 (W)
> http://www.mkei.org
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> On 6/14/13 5:36 AM, "Philipp Schiffer" <philipp.schiffer at gmail.com (mailto:philipp.schiffer at gmail.com)> wrote:
> 
> > Hi there!
> > 
> > Does anybody now if there is a module to parse the OrthoXML format
> > in/with biopython?
> > 
> > Thanks
> > 
> > Philipp
> > 
> > -- 
> > Philipp Schiffer
> > Sent with Sparrow (http://www.sparrowmailapp.com/?sig)
> > 
> > 
> > _______________________________________________
> > Biopython mailing list - Biopython at lists.open-bio.org (mailto:Biopython at lists.open-bio.org)
> > http://lists.open-bio.org/mailman/listinfo/biopython
> > 
> 
> 
>