[Biopython] Problem with parsing strand in Homo_sapiens.GRCh37.68 genbank files

Peter Cock p.j.a.cock at googlemail.com
Tue Aug 14 19:55:42 UTC 2012


On Tue, Aug 14, 2012 at 7:09 PM, Susan Wilson <smwilson at hpc.unm.edu> wrote:
> Peter!
>
> Thanks. I've been in a meeting all morning and apologize for not responding
> sooner.
>
> Yes I always see the warning about the malformed LOCUS line. I googled
> around, but couldn't find much, except about the second entry on the line
> being a problem, but when I substituted a character string for the "1", it
> didn't change anything, and since most everything else I was parsing seemed
> correct, I was just ignoring it.
>
> I will get the 1.60 version of Biopython and try it all again. I greatly
> appreciate your assistance.
>
> Susan

Great - good luck,

Peter



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