[Biopython] How to plot PHYLIP phylogenetic tree?!

Italo Maia italo.maia at gmail.com
Sat Sep 5 04:41:05 UTC 2009


Yeap, that's the one! Just found a library for parsing these newick trees.
Found them too late, actually. Just made my own image generator for newick
trees. The output kind of looks like *treeview* trees. Big thanks Peter = ]

A sample output can be viewed here:
http://img215.imageshack.us/img215/954/outk.png

ps: drawing trees is a pain in the....gee!


2009/9/4 Peter <biopython at maubp.freeserve.co.uk>

> On Fri, Sep 4, 2009 at 3:26 PM, Italo Maia<italo.maia at gmail.com> wrote:
> > Does anyone has a link or doc explaining the phylip tree format? I think
> > i'll try making some simple ploting for it.
>
> Do you mean the Newick tree format?
> http://evolution.genetics.washington.edu/phylip/newicktree.html
>
> Peter
>
> P.S. There is a short example using Bio.Nexus.Trees in the current
> tutorial.
>



-- 
"A arrogância é a arma dos fracos."

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Italo Moreira Campelo Maia
Ciência da Computação - UECE
Desenvolvedor WEB e Desktop
Programador Java, Python
Ubuntu User For Life!
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