[Biopython] How to plot PHYLIP phylogenetic tree?!

Italo Maia italo.maia at gmail.com
Fri Sep 4 14:26:10 UTC 2009


Does anyone has a link or doc explaining the phylip tree format? I think
i'll try making some simple ploting for it.


2009/9/3 Italo Maia <italo.maia at gmail.com>

> Yeap, i meant the pretty png way. I was thinking of something with
> python-imaging, maybe. Anyway, thanks Peter. If it does not exist, i won't
> waste time looking for it.
>
> 2009/9/3 Peter <biopython at maubp.freeserve.co.uk>
>
> On Wed, Sep 2, 2009 at 11:54 PM, Italo Maia<italo.maia at gmail.com> wrote:
>> > Is there any recepie to plot a phylip phylogenetic tree?
>>
>> If you mean as a simple text representation, then sort of. Try the
>> Bio.Nexus tree objects print methods.
>>
>> Do you meant draw a nice diagram (e.g. as a PDF or PNG file)? If
>> so, no, not at the moment. Some of the Google Summer of Code
>> project work including linking to NetworkX for graphics... this has
>> not yet been merged into Biopython.
>>
>> Peter
>>
>
>
>
> --
> "A arrogância é a arma dos fracos."
>
> ===========================
> Italo Moreira Campelo Maia
> Ciência da Computação - UECE
> Desenvolvedor WEB e Desktop
> Programador Java, Python
> Ubuntu User For Life!
> -----------------------------------------------------
> http://www.italomaia.com/
> http://twitter.com/italomaia/
> http://eusouolobomal.blogspot.com/
> ===========================
>



-- 
"A arrogância é a arma dos fracos."

===========================
Italo Moreira Campelo Maia
Ciência da Computação - UECE
Desenvolvedor WEB e Desktop
Programador Java, Python
Ubuntu User For Life!
-----------------------------------------------------
http://www.italomaia.com/
http://twitter.com/italomaia/
http://eusouolobomal.blogspot.com/
===========================




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