[Biopython] Phylogenetic trees with biopython?

[David Winter]

> David - I would prefer we also put your new wrappers in
> Bio.Emboss.Applications, and would be happy to look at adding
> those to CVS now that Biopython 1.51 is out (I had forgotten
> about them actually - so thanks for the reminder).
>
> Peter

Hi Peter,

I'd almost forgotten about them myself! I only put them in their own  
module because I had the PhyML wrapper as well and that's not an  
EMBOSS application.

  I suspect a wrapper for PhyML is probably not going to be widely  
useful (a normal run lasts at least several hours and most people will  
want to look over their alignments by eye before they set it off). So  
I'll move the phylip ones into Emboss.Applications and gather a few  
thoughts about other phylogenetic software including PhyML and see  
what the dev list thinks about them.

david