[Biopython] About bioseqI0

[Han Chen]

Hi, List of helpful people,

could your please offer me some help about bioseqIo?

here is the error message when run  "python setup.py test":

======================================================================
ERROR: test_SeqIO_online
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 248, in runTest
    suite = unittest.TestLoader().loadTestsFromName(name)
  File "/usr/local/lib/python2.6/unittest.py", line 576, in
loadTestsFromName
    module = __import__('.'.join(parts_copy))
  File "test_SeqIO_online.py", line 42, in <module>
    records = list(SeqIO.parse(handle, "swiss"))
  File
"/home/ch/biopython-1.51/build/lib.linux-x86_64-2.6/Bio/SeqIO/SwissIO.py",
line 39, in SwissIterator
    for swiss_record in swiss_records:
  File
"/home/ch/biopython-1.51/build/lib.linux-x86_64-2.6/Bio/SwissProt/__init__.py",
line 113, in parse
    record = _read(handle)
  File
"/home/ch/biopython-1.51/build/lib.linux-x86_64-2.6/Bio/SwissProt/__init__.py",
line 240, in _read
    raise ValueError("Unknown keyword '%s' found" % key)
ValueError: Unknown keyword '>s' found
----------------------------------------------------------------------
Ran 124 tests in 60.180 seconds

FAILED (failures = 1)

Is there anything wrong with SeqIO? I meet the following error when using
other package:

 DeprecationWarning: Bio.Fasta is deprecated. Please use the "fasta" support
in Bio.SeqIO (or Bio.AlignIO) instead

could you please help me about this？ thank you very much!

sincerely yours,
Han