[Biopython] Wanting to teach a class on biopython ..

William Heath wgheath at gmail.com
Tue Aug 25 17:08:27 UTC 2009


I am very interested in common bio python tasks as they relate specifically
to synthetic biology.  Could you give me some examples of such tasks?
-Tim

On Tue, Aug 25, 2009 at 10:06 AM, William Heath <wgheath at gmail.com> wrote:

> This is amazing thanks!
> -Tim
>
>
> On Tue, Aug 25, 2009 at 1:58 AM, Kristian Rother <krother at rubor.de> wrote:
>
>>
>> Hi William,
>>
>> I was teaching Python/BioPython in several courses for Biologists. I wrote
>> some individual lesson plans but they are rather not readable for other
>> people (see attachment). There is some material on-line, though:
>>
>> http://www.rubor.de/lehre_en.html
>>
>> Typically, the lessons consisted of 2h lecture + 1h exercises on language
>> concepts + 3h exercises on a single, more biological task. The code written
>> during the latter was reviewed and scored and the students knew about that.
>> They had a two-week Python crash course before.
>>
>> Details on request.
>>
>> Best Regards,
>>   Kristian
>>
>>
>> William Heath schrieb:
>>
>>> Hi All,
>>> I am a member of Tech Shop in Mountain View, CA and I want to teach a
>>> class
>>> on biopython that is specifically tailored toward the goals of synthetic
>>> biology.  Can anyone help me to come up with lesson plan for such a
>>> class?
>>>  In particular I want to use bio bricks, and good opensource design
>>> programs
>>> for biobricks.  Can anyone recommend any?
>>>
>>> I also want to utilize any/all concepts in this training:
>>>
>>> http://www.edge.org/documents/archive/edge296.html
>>>
>>> Please let me know your ideas on such a lesson plan.
>>>
>>>
>>> -Tim
>>> _______________________________________________
>>> Biopython mailing list  -  Biopython at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/biopython
>>>
>>>
>>>
>>
>>
>



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