[BioPython] will BioSQL work with psycopg2?

[Cymon Cox]

Hi Peter and Alex,

2008/12/1 Peter <biopython at maubp.freeserve.co.uk>

> On Mon, Dec 1, 2008 at 2:59 AM, Alex Lancaster wrote:
> > Currently I have a dependency on psycopg (version 1.1.21) but since
> > that is so old pyscopg won't rebuild against the new mx, meaning that
> > I can't rebuild Biopython because the dependencies aren't there.
> >
> > So my question is, will the Biopython BioSQL work with the newer
> > psycopg2 (currently version 2.0.8)?  See:
> > http://www.initd.org/pub/software/psycopg/
>
> Yes, psycopg2 should work with Biopython 1.49 onwards (including
> Biopython 1.49 beta) thanks to a patch from Cymon Cox, see Bug 2616:


To confirm: I'm currently using psycopg2 vers. 2.0.8


> > Does it require the 1.x API or will it work with 2.x?  The BioSQL page:
> > http://biopython.org/wiki/BioSQL
> > isn't clear on this.
>
> I'm not sure, having not used psycopg or psycopg2 myself.  Hopefully
> Cymon can clarify this (CC'd).


Sorry, but I'm not sure what the question is here...

Cheers, C.



-- 
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Cymon J. Cox