[BioPython] Error for installation of MySALdb on Mac OS X

[Y Tu]

Here is the copy of the output in the Terminal. Please help me to find out what's wrong. Thanks.



Last login: Wed Oct  3 08:28:38 on ttyp4

Welcome to Darwin!

LeesComputer:~ Lee$ echo
$PATH

/Library/Frameworks/Python.framework/Versions/Current/bin:/usr/local/bin:.:/usr/local/mysql:/bin:/sbin:/usr/bin:/usr/sbin



 
LeesComputer:~ Lee$ cd
/applications/python_bio/MySQL-python-1.2.2

LeesComputer:/applications/python_bio/MySQL-python-1.2.2
Lee$ python setup.py build

sh: line 1: mysql_config:
command not found

Traceback (most recent call
last):

  File "setup.py", line 16, in
<module>

    metadata, options = get_config()

  File
"/Applications/Python_Bio/MySQL-python-1.2.2/setup_posix.py", line
43, in get_config

    libs = mysql_config("libs_r")

  File
"/Applications/Python_Bio/MySQL-python-1.2.2/setup_posix.py", line
24, in mysql_config

    raise EnvironmentError, "%s not
found" % mysql_config.path

EnvironmentError:
mysql_config not found

 

LeesComputer:/applications/python_bio/MySQL-python-1.2.2
Lee$ cd /usr/local                                 

LeesComputer:/usr/local Lee$
ls -al

total 8

drwxr-xr-x    8 root 
wheel  272 Oct  1 13:02 .

drwxr-xr-x   10 root 
wheel  340 Sep 26 11:30 ..

drwxr-xr-x    8 root 
admin  272 Aug  6 04:00 ActivePerl-5.8

drwxr-xr-x   15 root 
wheel  510 Oct  2 03:52 bin

drwxr-xr-x    6 root 
wheel  204 Sep 27 05:22 include

drwxr-xr-x   12 root 
wheel  408 Sep 27 05:21 lib

lrwxr-xr-x    1 root 
wheel   25 Oct  1 13:02 mysql -> mysql-5.0.45-osx10.4-i686

drwxr-xr-x   19 root 
wheel  646 Jul  4 13:54 mysql-5.0.45-osx10.4-i686



> CC: biopython at lists.open-bio.org
> From: lists.steve at arachnedesign.net
> Subject: Re: [BioPython]  Error for installation of  MySALdb on Mac OS X
> Date: Mon, 1 Oct 2007 16:18:04 -0400
> To: ytu888 at hotmail.com
> 
> > I downloaded mysql-5.0.45-osx10.4-i686.dmg from mysql web and  
> > installed it. Then I tried to install MySQL-python-1.2.2 but got  
> > the following error. How to create the mysql_config.path file?  
> > Thank you very much.
> >
> > leesComputer:/applications/Python_Bio/MySQL-python-1.2.2 lee$  
> > python setup.py build
> > sh: line 1: mysql_config: command not found
> 
> It seems as if you need to have the `mysql_config` command in your  
> PATH variable and it's not there.
> 
> Look for where mysql was installed (maybe /usr/local/mysql/...) and  
> add its bin directory to your PATH environment variable. Or maybe it  
> installed some binaries/symlinks into your /usr/local/bin directory?
> 
> I think that'll do it for you.
> 
> -steve
> 

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