[BioPython] os.system problem with clustalw (on Windows)

[Emanuel Hey]

I'm avoiding directories with space names,  but I just
did a quick check.

This works

>>> align = do_alignment(cline)
>>> faa_filename =
'C:\\temp\\pythonplay\\hcgplay\\space test\\data.faa'
>>> cline = MultipleAlignCL(faa_filename)
>>> align = do_alignment(cline)

jhey

--- Peter <biopython at maubp.freeserve.co.uk> wrote:

> Emanuel Hey wrote:
> > Peter
> > 
> > both of these now work. 
> > 
> > faa_filename = 'data.faa'
> > cline = MultipleAlignCL(faa_filename)
> > align = do_alignment(cline)
> >
> > faa_filename =
> > 'C:\\temp\\pythonplay\\hcgplay\\data.faa'
> > cline = MultipleAlignCL(faa_filename)
> > align = do_alignment(cline)
> > 
> > Thanks!
> > 
> > jhey
> 
> Oh good :)
> 
> Have you tried file names and/or paths with spaces
> in them?
> 
> Peter
> 
> 



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