[BioPython] Do you mean Numpy or Numeric?

[Peter]

Peter wrote:
> ... the term "NumPy" in recent documentation means the third project, 
> used with "import numpy".  BUT in older documentation it is shorthand 
> for the first project, "Numerical python" used with "import Numeric".

Wolfgang Meyer wrote:
> IMHO, wherever "numpy" shows up in the current documentation should be
> replaced by 'numeric'. Simply image a user who just come to the filed
> and is unaware of the development history of numpy, (nor does he/she is
> aware of the 'misuse' of the term). When he/she is reading BioPython
> documentation, he will definitely take "NumPy" for "numpy".

I agree with you :)

I have updated the python comments (and the one use of "numpy" in the 
Bio.PDB manual) to change "NumPy" (and other case variants) to use 
"Numeric" instead.  If I've missed anything, let me know.

I have NOT made any functional changes to the code.

Peter