[BioPython] PopGen module for Biopython?

Ralph Haygood rhaygood at duke.edu
Fri Feb 10 13:12:28 EST 2006


Marc,

To me, Bio.Systematics sounds like phylogeny estimation, which my
module doesn't do at all, and which would deserve its own package(s).
I think the name of my package needs to indicate population genetics,
like BioPerl's Bio::PopGen.  I had in mind that some people might
prefer Bio.PopulationGenetics to Bio.PopGen, which would be fine with
me if there were majority support for it.

Ralph

On Fri, 10 Feb 2006, Marc Colosimo wrote:

> Ralph Haygood wrote:
>
> >I've received encouraging responses to my message of this Tuesday proposing a
> >Biopython module for population-genetic analyses.  So I'll go ahead and revise
> >my module for incorporation into Biopython.  Unless someone objects, I'll name
> >the package Bio.PopGen.  Until it's ready to use, I suggest further discussion
> >of it happen on Biopython-dev.
> >
> Just a suggestion, what about Bio.Systematics as the package name? I
> think this is more general and other people could add similar things
> under it.
>
> Marc
>
>
>
>


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