[BioPython] LAPACK error
Michiel Jan Laurens de Hoon
mdehoon at ims.u-tokyo.ac.jp
Mon Sep 27 22:09:28 EDT 2004
> And just BTW, any idea of when Biopython might move from Numeric to
I am not sure to what degree numarray has been accepted by the user community as
a replacement for Numeric. For example, SciPy expects this transition to take
years. The transition will not be that straightforward either, as some of the C
extension modules will have to be modified. So my personal expectation is that
it may take some time. What do other users/developers think?
Paul-Michael Agapow wrote:
> gcc -pthread -shared build/temp.linux-i686-2.3/Src/lapack_litemodule.o
> -L/usr/lib/atlas -llapack -lcblas -lf77blas -latlas -lg2c -o
> ld: cannot find -llapack
> collect2: ld returned 1 exit status
> error: command 'gcc' failed with exit status 1
I have seen this error before, but only with the latest version of Numeric
(23.3). With to the earlier version (23.1) of Numeric, I had no such problems.
So that might be your easiest solution.
Michiel de Hoon, Assistant Professor
University of Tokyo, Institute of Medical Science
Human Genome Center
4-6-1 Shirokane-dai, Minato-ku
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