[BioPython] genbank parser error with new cvs

Richard Llewellyn rich at mbi.ucla.edu
Wed Dec 3 23:11:27 EST 2003


Hello,

I'm using GenBank to parse plasmid genbank files.  Most files are ok
(Biopython providing a great tool), but
a few throw "Martel.Parser.ParserPositionException: error parsing at or
beyond character #".  I noticed this issue in the archives, so I
installed the
newest cvs of genbank_format, Record, and Martel.Parser with the
current 1.23
biopython, but to no avail.   Are there other relevant modules I should
try?

The problem file is NC_003037, a large plasmid from Sinor. mel.

Thanks for the efforts.

Rich


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