[Biopython-dev] Biopython 1.56 release plans

Michiel de Hoon mjldehoon at yahoo.com
Fri Nov 5 09:40:19 UTC 2010


I think the following should be removed before the release:

Bio/SwissProt/SProt.py
Bio/Transcribe.py
Bio/Translate.py

as well as the Iterator class in Bio/SCOP/Dom.py.

These have been deprecated since Biopython 1.52.

Best,
--Michiel.

--- On Thu, 11/4/10, Peter <biopython at maubp.freeserve.co.uk> wrote:

> From: Peter <biopython at maubp.freeserve.co.uk>
> Subject: [Biopython-dev] Biopython 1.56 release plans
> To: "Biopython-Dev Mailing List" <biopython-dev at biopython.org>
> Date: Thursday, November 4, 2010, 1:13 PM
> Hi all,
> 
> I've mentioned in recent threads that I think we should try
> and
> release Biopython 1.56 this month (November 2010).
> 
> I think the NEWS file is pretty up to date, and covers
> important
> new functionality like Andrea Pierleoni's UniProt XML
> parser
> and the IMGT support (with Uri Laserson).
> 
> Is there any other functionality which is ready for
> merging?
> 
> For example, Tiago - you've been doing lots of work on
> your
> branch with the PopGen code. Is that code ready? I'm
> willing
> to do the git merge/rebase.
> 
> Is there any reason to bother with a beta release this
> time?
> 
> If there are no pressing additions, I may be able to do
> the
> release tomorrow - otherwise how about aiming for Thursday
> or Friday next week (11 or 12 November)?
> 
> Regards,
> 
> Peter
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> Biopython-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biopython-dev
> 


      



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