[Biopython-dev] Another Biopython release?

Peter biopython at maubp.freeserve.co.uk
Wed Sep 16 13:30:47 UTC 2009


On Wed, Sep 16, 2009 at 1:34 PM, Brad Chapman <chapmanb at 50mail.com> wrote:
> Hi Peter;
>
>> > I know it's been only a month since we released Biopython 1.51, but
>> > does anyone (other than me) think that we already have enough done
>> > to warrant another release? The associated CVS freeze would also
>> > serve as a good break point for moving to github (see other threads).
>
> I don't have a strong opinion about the release. It seems a little
> early but if you think we are ready go for it.

OK.

> I have tested Osvaldo's Novoalign commandline object and have it
> ready to get in. Right now it's in a git tree but I can move it
> over to a CVS tree and integrate it for the release. It'll live in
> Bio/Sequencing/Applications like you suggested. I should be able to
> do that this evening.

Go for it - I presume you have it in a private git repostory at the
moment, as I couldn't spot it on github?

> I am all about the move to Git and GitHub. Anything we can do to
> finish that off and make it official is cool by me.
>
>> That would be great. As for the move to github, I've added some (quite
>> preliminary) docs for developers on how to make commits to the main
>> branch using git and github to the wiki:
>> http://www.biopython.org/wiki/GitUsage#Commiting_changes_to_main_branch
>
> This is looking great. I'd agree with Eric that we should be
> consistent in the doc for suggestions on naming the official
> biopython branch:
>
> git remote add upstream git://github.com/biopython/biopython.git
> git remote add official git at github.com:biopython/biopython.git
>
> My vote is for the "official" naming which is a little more
> specific.

Well, both "official" and "upstream" have merit. I don't mind which,
but it does make sense to be consistent.

Peter



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