[Biopython-dev] BioSQL

[Michiel De Hoon]

> On your system, I guess that MySQL is available but the
> username/password are wrong.  If we revert these to being undefined,
> then the test should fail as before with MissingExternalDependencyError.
> 
> Can you check that easily?  I should probably add an error handler to
> look for permission denied too...

If I comment out DBDRIVER and DBTYPE in setup_BioSQL.py, then the test fails
with a MissingExternalDependencyError as before.

--Michiel.



Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032