[Bioperl-pipeline] runnable parameters

[Elia Stupka]

> Well, u only create one object with the minimal info. For things like
> GFD/Virtual Contig, you go thru multiple function calls that are
> baggage when all u need is some simple start-end info.

Sure, though I seem to remember Freeze::Thawing is painfully slow. The
first design of the pipeline was freezing job objects on the head node and
thawing them on the compute nodes, then the db persistency was chosen ;)

But it's a card to keep up our sleeve if we need to use it.

> ok that will do for now. Anything more complex than cigar string, I
> feel tag-values may run its course...so we go for GFD then?

Sorry now you confuse me, we've just decided for cigar lines,
right? Coming to chat...

Elia

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