[Bioperl-pipeline] runnable parameters
Elia Stupka
elia@fugu-sg.org
Fri, 13 Sep 2002 08:49:38 +0800 (SGT)
> Essentially, how does one submit a job with inputs to the node without
> having the inputs fetched. I can't think of many. So this maybe
> silly.
Uh, thought we agreed on the cigar line, which sounds very sane to me.
> DataMonger runner.pl that takes in a file as a parameter. (this file
> path is stored in some table) This script then parses the file structure
> knowing how to recreate the object from that minimal info.
You don't need that, you can use the Freeze-Thaw module to freeze objects
in files if we ever need that.
> it seems that a lot of performance hit is in method calls and a bit on
> object construction. (Think GFD/VirtualContig).
of course Freezing-Thawing means recreating the objects anyway....
> of course the silly thing is we are moving the database in to flat
> files..a no no right?..maybe GFD is the way to go. comments?
cigar line is fine....
> oops sorry about that. you ready to enlighten them, 'Sid' ? ;)
Sure no problem.... have 40 slides, ready to rock :)
Elia
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